CDS

Accession Number TCMCG034C12135
gbkey CDS
Protein Id XP_008369130.1
Location complement(join(854733..854876,855603..855686,855857..855961,856036..856173,856358..856449,856997..857063,857380..857507,858003..858066,859299..859411,859555..859702))
Gene LOC103432714
GeneID 103432714
Organism Malus domestica

Protein

Length 360aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA534520
db_source XM_008370908.3
Definition endonuclease III homolog 1, chloroplastic [Malus domestica]

EGGNOG-MAPPER Annotation

COG_category L
Description Bifunctional DNA N-glycosylase with associated apurinic apyrimidinic (AP) lyase function that catalyzes the first step in base excision repair (BER), the primary repair pathway for the repair of oxidative DNA damage. The DNA N-glycosylase activity releases the damaged DNA base from DNA by cleaving the N- glycosidic bond, leaving an AP site. The AP lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination. Primarily recognizes and repairs oxidative base damage of pyrimidines
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko01000        [VIEW IN KEGG]
ko03400        [VIEW IN KEGG]
KEGG_ko ko:K10773        [VIEW IN KEGG]
EC 4.2.99.18        [VIEW IN KEGG]        [VIEW IN INGREDIENT]
KEGG_Pathway ko03410        [VIEW IN KEGG]
map03410        [VIEW IN KEGG]
GOs GO:0000702        [VIEW IN EMBL-EBI]
GO:0000703        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003824        [VIEW IN EMBL-EBI]
GO:0003906        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0005783        [VIEW IN EMBL-EBI]
GO:0005911        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006259        [VIEW IN EMBL-EBI]
GO:0006281        [VIEW IN EMBL-EBI]
GO:0006284        [VIEW IN EMBL-EBI]
GO:0006285        [VIEW IN EMBL-EBI]
GO:0006289        [VIEW IN EMBL-EBI]
GO:0006296        [VIEW IN EMBL-EBI]
GO:0006464        [VIEW IN EMBL-EBI]
GO:0006479        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0006950        [VIEW IN EMBL-EBI]
GO:0006974        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0008168        [VIEW IN EMBL-EBI]
GO:0008170        [VIEW IN EMBL-EBI]
GO:0008213        [VIEW IN EMBL-EBI]
GO:0008276        [VIEW IN EMBL-EBI]
GO:0008757        [VIEW IN EMBL-EBI]
GO:0009295        [VIEW IN EMBL-EBI]
GO:0009506        [VIEW IN EMBL-EBI]
GO:0009507        [VIEW IN EMBL-EBI]
GO:0009532        [VIEW IN EMBL-EBI]
GO:0009536        [VIEW IN EMBL-EBI]
GO:0009570        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0012505        [VIEW IN EMBL-EBI]
GO:0016278        [VIEW IN EMBL-EBI]
GO:0016279        [VIEW IN EMBL-EBI]
GO:0016740        [VIEW IN EMBL-EBI]
GO:0016741        [VIEW IN EMBL-EBI]
GO:0016787        [VIEW IN EMBL-EBI]
GO:0016798        [VIEW IN EMBL-EBI]
GO:0016799        [VIEW IN EMBL-EBI]
GO:0018022        [VIEW IN EMBL-EBI]
GO:0018193        [VIEW IN EMBL-EBI]
GO:0018205        [VIEW IN EMBL-EBI]
GO:0019104        [VIEW IN EMBL-EBI]
GO:0019538        [VIEW IN EMBL-EBI]
GO:0030054        [VIEW IN EMBL-EBI]
GO:0032259        [VIEW IN EMBL-EBI]
GO:0033554        [VIEW IN EMBL-EBI]
GO:0033683        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0036211        [VIEW IN EMBL-EBI]
GO:0042644        [VIEW IN EMBL-EBI]
GO:0042646        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043228        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043232        [VIEW IN EMBL-EBI]
GO:0043412        [VIEW IN EMBL-EBI]
GO:0043414        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044267        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044434        [VIEW IN EMBL-EBI]
GO:0044435        [VIEW IN EMBL-EBI]
GO:0044444        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0050896        [VIEW IN EMBL-EBI]
GO:0051716        [VIEW IN EMBL-EBI]
GO:0055044        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0090305        [VIEW IN EMBL-EBI]
GO:0140096        [VIEW IN EMBL-EBI]
GO:0140097        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901564        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGCTACATGTCCGTGTGAGAAGCCCCTCCACCCTCGGCTTTGCAACCGCTCGAATCCAATTCAACAGAATGTCCAAAACGAGATTCTCTGTCAAACCCATTCAATCCAAAACAGAGATACCCACTTCCGACCCAGACCCAAACCCAGGCTCTGAAAACGGTTCAGCAGCAGAGCTTCGTGTTTTTTCGAGGAGAAAGAGAGTGAAAAGGACAGAAGAAGTTCAAAAATTACAGCTTGAAGCAAAACCCATTGCCCAGAAACTGGCTGTACTACCTGATATTGAAGAATTCGCATACAAAAAAGTGAATACATCTACCAATTCAATTGACACAGGTAAACCACCTGCTAACTGGGAGAAAGTCCTTGATGGGATTCGCAAAATGAGGTCTTCTGAAGATGCACCAGTAGACAGTATGGGTTGCGAGAAAGCTGGAAGCTCTCTTCCTCCTAAGGAACGAAGATTTGCTGTCTTGGTGTCTTCTCTCTTGTCAAGCCAAACGAAGGATCATGTTAACCATGGAGCAATTCAGCGTTTACTTCAAAATGGTCTGCTCTCTGCTGATTCCATTGATAAAGCTGATGAAGCAACCATTAAAAGCTTGATTTACCCGGTTGGATTTTATACAAGAAAGGCTGGTAACTTAAAGAAAGTTGCAAACATTTGTCTCACGAAGTATGATGGAGATATACCTAGCTCGTTGGAGGAACTACTCTCACTTCCAGGAATAGGTCCTAAGATGGCTCATTTGGTTATGAATGTTGGTTGGAACGATGTTCAAGGTATTTGTGTAGATACTCATGTGCACCGCATTTGCAATAGGCTTGGGTGGGTGTCACGGCCAGGAAAAAAACAGAAAACTTCAACTCCTGAGCAAACGAGAGAGGCATTGCAATTGTGGCTTCCGAAGGAAGAATGGGACCCCATAAACCCTCTTTTGGTAGGATTTGGACAGACAATTTGCACTCCCCTCAGACCTCGTTGTGGATTGTGCAGTGTGAGCGAGTTTTGCCCATCTGCATTCAAAGAGGCTTCAAGTCCGTCATCCAAGTCAAAGAAGTCTGGTTTAAACAAGAAGCTTTGA
Protein:  
MLHVRVRSPSTLGFATARIQFNRMSKTRFSVKPIQSKTEIPTSDPDPNPGSENGSAAELRVFSRRKRVKRTEEVQKLQLEAKPIAQKLAVLPDIEEFAYKKVNTSTNSIDTGKPPANWEKVLDGIRKMRSSEDAPVDSMGCEKAGSSLPPKERRFAVLVSSLLSSQTKDHVNHGAIQRLLQNGLLSADSIDKADEATIKSLIYPVGFYTRKAGNLKKVANICLTKYDGDIPSSLEELLSLPGIGPKMAHLVMNVGWNDVQGICVDTHVHRICNRLGWVSRPGKKQKTSTPEQTREALQLWLPKEEWDPINPLLVGFGQTICTPLRPRCGLCSVSEFCPSAFKEASSPSSKSKKSGLNKKL